The Journal of Heredity 2001:92(4)
© 2001 The American Genetic Association 92:371-373
Computer Note |
DAMBE: Software Package for Data Analysis in Molecular Biology and Evolution
From the Bioinformatics Laboratory, Department of Ecology and Biodiversity, University of Hong Kong, Pokfulam Road, Hong Kong.
Address correspondence to Xuhua Xia at the address above or e-mail: xxia{at}hkusua.hku.hk.
DAMBE (data analysis in molecular biology and evolution) is an integrated software package for converting, manipulating, statistically and graphically describing, and analyzing molecular sequence data with a user-friendly Windows 95/98/2000/NT interface. DAMBE is free and can be downloaded from http://web.hku.hk/~xxia/software/software.htm. The current version is 4.0.36.
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B. Moury Differential Selection of Genes of Cucumber Mosaic Virus Subgroups Mol. Biol. Evol., August 1, 2004; 21(8): 1602 - 1611. [Abstract] [Full Text] [PDF]
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T. de Oliveira, M. Salemi, M. Gordon, A.-M. Vandamme, E. J. van Rensburg, S. Engelbrecht, H. M. Coovadia, and S. Cassol Mapping Sites of Positive Selection and Amino Acid Diversification in the HIV Genome: An Alternative Approach to Vaccine Design? Genetics, July 1, 2004; 167(3): 1047 - 1058. [Abstract] [Full Text] [PDF]
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X. Wang and J. Zhang Rapid Evolution of Mammalian X-Linked Testis-Expressed Homeobox Genes Genetics, June 1, 2004; 167(2): 879 - 888. [Abstract] [Full Text] [PDF]
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K. Hanada, Y. Suzuki, and T. Gojobori A Large Variation in the Rates of Synonymous Substitution for RNA Viruses and Its Relationship to a Diversity of Viral Infection and Transmission Modes Mol. Biol. Evol., June 1, 2004; 21(6): 1074 - 1080. [Abstract] [Full Text] [PDF]
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K. T. Zlateva, P. Lemey, A.-M. Vandamme, and M. Van Ranst Molecular Evolution and Circulation Patterns of Human Respiratory Syncytial Virus Subgroup A: Positively Selected Sites in the Attachment G Glycoprotein J. Virol., May 1, 2004; 78(9): 4675 - 4683. [Abstract] [Full Text] [PDF]
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A. Fiebig, R. Kimport, and D. Preuss Comparisons of pollen coat genes across Brassicaceae species reveal rapid evolution by repeat expansion and diversification PNAS, March 2, 2004; 101(9): 3286 - 3291. [Abstract] [Full Text] [PDF]
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N. R. Chowdhury, O. C. Stine, J. G. Morris, and G. B. Nair Assessment of Evolution of Pandemic Vibrio parahaemolyticus by Multilocus Sequence Typing J. Clin. Microbiol., March 1, 2004; 42(3): 1280 - 1282. [Abstract] [Full Text] [PDF]
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B. Klempa, M. Schutt, B. Auste, M. Labuda, R. Ulrich, H. Meisel, and D. H. Kruger First Molecular Identification of Human Dobrava Virus Infection in Central Europe J. Clin. Microbiol., March 1, 2004; 42(3): 1322 - 1325. [Abstract] [Full Text] [PDF]
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N. Yu, M. I. Jensen-Seaman, L. Chemnick, O. Ryder, and W.-H. Li Nucleotide Diversity in Gorillas Genetics, March 1, 2004; 166(3): 1375 - 1383. [Abstract] [Full Text] [PDF]
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S. Van Dooren, V. Shanmugam, V. Bhullar, B. Parekh, A.-M. Vandamme, W. Heneine, and W. M. Switzer Identification in gelada baboons (Theropithecus gelada) of a distinct simian T-cell lymphotropic virus type 3 with a broad range of Western blot reactivity J. Gen. Virol., February 1, 2004; 85(2): 507 - 519. [Abstract] [Full Text] [PDF]
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 P. J. Esteves, D. Lanning, N. Ferrand, K. L. Knight, S.-K. Zhai, and W. van der Loo Allelic Variation at the VHa Locus in Natural Populations of Rabbit (Oryctolagus cuniculus, L.) J. Immunol., January 15, 2004; 172(2): 1044 - 1053. [Abstract] [Full Text] [PDF]
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V. Courgnaud, B. Abela, X. Pourrut, E. Mpoudi-Ngole, S. Loul, E. Delaporte, and M. Peeters Identification of a New Simian Immunodeficiency Virus Lineage with a vpu Gene Present among Different Cercopithecus Monkeys (C. mona, C. cephus, and C. nictitans) from Cameroon J. Virol., December 1, 2003; 77(23): 12523 - 12534. [Abstract] [Full Text] [PDF]
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R. R. Tonjes and M. Niebert Relative Age of Proviral Porcine Endogenous Retrovirus Sequences in Sus scrofa Based on the Molecular Clock Hypothesis J. Virol., November 15, 2003; 77(22): 12363 - 12368. [Abstract] [Full Text] [PDF]
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N. Yu, M. I. Jensen-Seaman, L. Chemnick, J. R. Kidd, A. S. Deinard, O. Ryder, K. K. Kidd, and W.-H. Li Low Nucleotide Diversity in Chimpanzees and Bonobos Genetics, August 1, 2003; 164(4): 1511 - 1518. [Abstract] [Full Text] [PDF]
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A. M. Lindberg, P. Andersson, C. Savolainen, M. N. Mulders, and T. Hovi Evolution of the genome of Human enterovirus B: incongruence between phylogenies of the VP1 and 3CD regions indicates frequent recombination within the species J. Gen. Virol., May 1, 2003; 84(5): 1223 - 1235. [Abstract] [Full Text] [PDF]
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A. Steinrigl and D. Klein Phylogenetic analysis of feline immunodeficiency virus in Central Europe: a prerequisite for vaccination and molecular diagnostics J. Gen. Virol., May 1, 2003; 84(5): 1301 - 1307. [Abstract] [Full Text] [PDF]
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A. Gandolfi, I. R. Sanders, V. Rossi, and P. Menozzi Evidence of Recombination in Putative Ancient Asexuals Mol. Biol. Evol., May 1, 2003; 20(5): 754 - 761. [Abstract] [Full Text] [PDF]
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 A. Navarro and N. H. Barton Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes Science, April 11, 2003; 300(5617): 321 - 324. [Abstract] [Full Text] [PDF]
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 J Cocquet, E Pailhoux, F Jaubert, N Servel, X Xia, M Pannetier, E De Baere, L Messiaen, C Cotinot, M Fellous, et al. Evolution and expression of FOXL2 J. Med. Genet., December 1, 2002; 39(12): 916 - 921. [Full Text] [PDF]
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S. Yi, D. L. Ellsworth, and W.-H. Li Slow Molecular Clocks in Old World Monkeys, Apes, and Humans Mol. Biol. Evol., December 1, 2002; 19(12): 2191 - 2198. [Abstract] [Full Text] [PDF]
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J. A. Harton, M. W. Linhoff, J. Zhang, and J. P.-Y. Ting Cutting Edge: CATERPILLER: A Large Family of Mammalian Genes Containing CARD, Pyrin, Nucleotide-Binding, and Leucine-Rich Repeat Domains J. Immunol., October 15, 2002; 169(8): 4088 - 4093. [Abstract] [Full Text] [PDF]
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B. Moury, C. Morel, E. Johansen, and M. Jacquemond Evidence for diversifying selection in Potato virus Y and in the coat protein of other potyviruses J. Gen. Virol., October 1, 2002; 83(10): 2563 - 2573. [Abstract] [Full Text] [PDF]
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