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Journal of Heredity 2003:94(4)
© 2003 The American Genetic Association 94:358-359

Computer Note

TetraploidMap: Construction of a Linkage Map in Autotetraploid Species

C. A. Hackett, and Z. W. Luo

From Biomathematics and Statistics Scotland, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DE, UK (Hackett) and School of Biosciences, University of Birmingham, Birmingham B15 2TT, UK (Luo).

Address correspondence to Christine Anne Hackett at the address above or James McNicol, Biomathematics and Statistics Scotland, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DE, UK, or e-mail: christine{at}bioss.ac.uk or jim{at}bioss.sari.ac.uk.

TetraploidMap is a suite of Fortran 90 routines run from Microsoft Windows with a text-based input and output. TetraploidMap enables the user to assemble a linkage map from dominant and codominant (multiallelic) marker loci scored for the parents and full-sib progeny of a cross in an autotetraploid species. It includes routines for the inference of the parental genotypes, identification of linkage groups, two-point analysis to estimate the recombination frequency and LOD score between all pairs of marker in a linkage group, and locus ordering by simulated annealing.


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