© 2004 The American Genetic Association
Computer Note |
GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection
From the Centre de Biologie et de Gestion des Populations, INRA, Campus International de Baillarguet CS 30 016, F34988, Monferrier-sur-Lez CEDEX, France (Piry, Alapetite, Cornuet, and Estoup); Wildlife Genetics International, Box 274, Nelson, BC V1L 5P9, Canada (Paetkau); and CIRAD, Département Cultures Pérennes, Avenue Agropolis, F34098 Montpellier CEDEX 5, France (Baudouin)
Address correspondence to Sylvain Piry at the address above, or e-mail: piry{at}ensam.inra.fr.
GENECLASS2 is a software that computes various genetic assignment criteria to assign or exclude reference populations as the origin of diploid or haploid individuals, as well as of groups of individuals, on the basis of multilocus genotype data. In addition to traditional assignment aims, the program allows the specific task of first-generation migrant detection. It includes several Monte Carlo resampling algorithms that compute for each individual its probability of belonging to each reference population or to be a resident (i.e., not a first-generation migrant) in the population where it was sampled. A user-friendly interface facilitates the treatment of large datasets.
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