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Journal of Heredity Advance Access originally published online on December 15, 2004
Journal of Heredity 2005 96(2):161-166; doi:10.1093/jhered/esi023
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© The American Genetic Association. 2004. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org

Brief Communication

Power of Microsatellite Markers for Fingerprinting and Parentage Analysis in Eucalyptus grandis Breeding Populations

M. Kirst, C. M. Cordeiro, G. D. S. P. Rezende, and D. Grattapaglia

From the Plant Genetics Laboratory – EMBRAPA Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Brasília 70770-970 DF, Brazil (Kirst, Cordeiro, and Grattapaglia); Research and Technology Center – Aracruz Celulose S.A. C.P. 331011 Aracruz 29197-000 ES, Brazil (Rezende); and Genomic Sciences Laboratory, Universidade Catolica de Brasília – SGAN 916 modulo B, Brasília 70790-160 DF (Grattapaglia)

Address correspondence to Dario Grattapaglia, Laboratório de Genética de Plantas – EMBRAPA Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Brasília 70770-970 DF, Brazil, or e-mail: dario{at}cenargen.embrapa.br.

We report the genetic analysis of 192 unrelated individuals of an elite breeding population of Eucalyptus grandis (Hill ex Maiden) with a selected set of six highly polymorphic microsatellite markers developed for species of the genus Eucalyptus. A full characterization of this set of six loci was carried out generating allele frequency distributions that were used to estimate parameters of genetic information content of these loci, including expected heterozygosity, polymorphism information content (PIC), power of exclusion, and probability of identity. The number of detected alleles per locus ranged from 6 to 33, with an average of 19.8 ± 9.2. The average expected heterozygosity was 0.86 ± 0.11 and the average PIC was 0.83 ± 0.16. Using only three loci, it was possible to discriminate all 192 individuals. The overall probability of identity considering all six EMBRA microsatellite markers combined was lower than 1 in 2 billion. An analysis of the sample size necessary to estimate expected heterozygosity with minimum variance indicated that at least 64 individuals have to be genotyped to characterize this parameter with adequate accuracy for most microsatellites in Eucalyptus. The high degree of multiallelism and the clear and simple codominant Mendelian inheritance of the set of microsatellites used provide an extremely powerful system for the unique identification of Eucalyptus individuals for fingerprinting purposes and parentage testing.


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