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Journal of Heredity Advance Access originally published online on January 24, 2008
Journal of Heredity 2008 99(2):232-236; doi:10.1093/jhered/esm109
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© The American Genetic Association. 2008. All rights reserved. For permissions, please email: journals.permissions@oxfordjournals.org.

Computer Notes

GGT 2.0: Versatile Software for Visualization and Analysis of Genetic Data

Ralph van Berloo

From the Laboratory of Plant Breeding, Wageningen University, PO Box 386, Wageningen, The Netherlands

Address correspondence to R. van Berloo, Keygene NV, PO Box 216, Wageningen, The Netherlands, or e-mail: ralph.van-berloo{at}keygene.com.

Ever since its first release in 1999, the free software package for visualization of molecular marker data, graphical genotype (GGT), has been constantly adapted and improved. The GGT package was developed in a plant-breeding context and thus focuses on plant genetic data but was not intended to be limited to plants only. The current version has many options for genetic analysis of populations including diversity analyses and simple association studies. A second release of the GGT package, GGT 2.0 (available through http://www.plantbreeding.wur.nl), is therefore presented in this paper. An overview of existing and new features that are available within GGT 2.0, and a case study in which GGT 2.0 is applied to analyze an existing set of plant genetic data, are presented and discussed.

Corresponding Editor: Leif Andersson

Received March 1, 2007
Accepted November 2, 2007


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