The Journal of Heredity 2001:92(3)
© 2001 The American Genetic Association 92:301-302
Computer Note |
EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations
From the Institute of Zoology, University of Bern, CH3032, Hinterkappelen-Bern, Switzerland.
Address correspondence to Francois Balloux at the address above or e-mail: francois. balloux@esh.unibe.ch.
 |
Introduction |
|---|
If there are many programs for population genetics data analysis, less effort has been devoted to simulation software in this field. However, there are many situations where simulated population genetics datasets would be very useful. Simulations allow exploring situations too complex to be solved analytically. Indeed, outside very simple population genetics models, it is often extremely difficult to obtain the expectations for quantities such as gene correlation or effective size. Simulations also permit us to
|
Program Description |
|---|
|
Input and Output |
|---|
|
How to get the Program |
|---|
|
Acknowledgments |
|---|
|
Footnotes |
|---|
|
References |
|---|
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  E. Durand, F. Jay, O. E. Gaggiotti, and O. Francois Spatial Inference of Admixture Proportions and Secondary Contact Zones Mol. Biol. Evol., September 1, 2009; 26(9): 1963 - 1973. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. Rougeron, T. De Meeus, M. Hide, E. Waleckx, H. Bermudez, J. Arevalo, A. Llanos-Cuentas, J.-C. Dujardin, S. De Doncker, D. Le Ray, et al. Extreme inbreeding in Leishmania braziliensis PNAS, June 23, 2009; 106(25): 10224 - 10229. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Kim and T. Wiehe Simulation of DNA sequence evolution under models of recent directional selection Brief Bioinform, January 1, 2009; 10(1): 84 - 96. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. D. Levsen, D. J. Crawford, J. K. Archibald, A. Santos-Geurra, and M. E. Mort Nei's to Bayes': comparing computational methods and genetic markers to estimate patterns of genetic variation in Tolpis (Asteraceae) Am. J. Botany, November 1, 2008; 95(11): 1466 - 1474. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Carlsson Effects of Microsatellite Null Alleles on Assignment Testing J. Hered., November 1, 2008; 99(6): 616 - 623. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Peng and C. I. Amos Forward-time simulations of non-random mating populations using simuPOP Bioinformatics, June 1, 2008; 24(11): 1408 - 1409. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Padhukasahasram, P. Marjoram, J. D. Wall, C. D. Bustamante, and M. Nordborg Exploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations Genetics, April 1, 2008; 178(4): 2417 - 2427. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Antao, A. Beja-Pereira, and G. Luikart MODELER4SIMCOAL2: A user-friendly, extensible modeler of demography and linked loci for coalescent simulations Bioinformatics, July 15, 2007; 23(14): 1848 - 1850. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Guillaume and J. Rougemont Nemo: an evolutionary and population genetics programming framework Bioinformatics, October 15, 2006; 22(20): 2556 - 2557. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Foll and O. Gaggiotti Identifying the Environmental Factors That Determine the Genetic Structure of Populations Genetics, October 1, 2006; 174(2): 875 - 891. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Vasemagi The Adaptive Hypothesis of Clinal Variation Revisited: Single-Locus Clines as a Result of Spatially Restricted Gene Flow Genetics, August 1, 2006; 173(4): 2411 - 2414. [Full Text] [PDF]
|
|
|
|
|
|
J. Goudet and L. Buchi The Effects of Dominance, Regular Inbreeding and Sampling Design on QST, an Estimator of Population Differentiation for Quantitative Traits Genetics, February 1, 2006; 172(2): 1337 - 1347. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Peng and M. Kimmel simuPOP: a forward-time population genetics simulation environment Bioinformatics, September 15, 2005; 21(18): 3686 - 3687. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Guillot, A. Estoup, F. Mortier, and J. F. Cosson A Spatial Statistical Model for Landscape Genetics Genetics, July 1, 2005; 170(3): 1261 - 1280. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Balloux, L. Lehmann, and T. de Meeus The Population Genetics of Clonal and Partially Clonal Diploids Genetics, August 1, 2003; 164(4): 1635 - 1644. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. J. Hardy, N. Charbonnel, H. Freville, and M. Heuertz Microsatellite Allele Sizes: A Simple Test to Assess Their Significance on Genetic Differentiation Genetics, April 1, 2003; 163(4): 1467 - 1482. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. C. Fisher, B. Rannala, V. Chaturvedi, and J. W. Taylor Disease surveillance in recombining pathogens: Multilocus genotypes identify sources of human Coccidioides infections PNAS, June 25, 2002; 99(13): 9067 - 9071. [Abstract] [Full Text] [PDF]
|
|